Screenshots

Revision as of 15:31, 20 September 2006 by Mhonig (talk | contribs)

geWorkbench screenshots

Microarray Panel

The Microarray Panel displaying marker values for selected array.


Microarray-panel.png


Color Mosaic

The Color Mosaic component displaying selected arrays, group designation and marker names.


Color-mosaic.png


Expression Profile

Expression Profile plotting values for selected markers and arrays.


Expression-profile.png


Hierarchical Clustering

A Dendrogram displays the results of the Hierarchical clustering analysis.


Dendrogram.png


SOM Clustering

Self Ordered Map clustering results are displayed as series of expression profiles corresponding to discovered groupings.


Somcluster.png


Scatter Plot

Compare multiple markers or arrays with the standard Scatter Plot analysis.


Scatterplot.png


Volcano Plot

The Volcano Plot shows the results of a T Test analysis.


Volcanoplot.png


caBIO Pathway

Using a connection to caBIO, pathway diagrams can be retrieved and displayed.


Cabiopathway.png


Reverse Engineering

Use the ARACNE algorithm to reverse engineer the underlying gene regulatory network.


Reverseengineering.png


Cytoscape

Use the Cytoscape network visualization to view the reverse engineered regulatory network.


Cytoscape.png


Pattern Discovery

Use the SPLASH algorithm to discover sparse amino or nucleic acid patterns in a loaded sequence.


Patterndiscovery.png


Promoter Panel

The Promoter Panel uses the JASPAR Transcription Factor Binding Profile Database to search for promoter regions in the loaded sequence.


Promoterpanel.png


BLAST Queries

The BLAST panel runs queries against the Paracel Blast machine running at the Columbia Genome Center.


Blastresults.png