Difference between revisions of "Talk:Home"

('''Microarray data''')
(Feature requests for geWorkbench)
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== Feature requests for geWorkbench ==
 
== Feature requests for geWorkbench ==
 +
=== General Features ===
 +
* Mantis 0000114: Persisting configuration settings designated through the visual builder
 +
At present, changes to the start up configuration effected during the
 +
application execution (through the Visual Builder) do not get persisted: when
 +
the application is launched the original start up configuration is used again.
 +
 +
It is desirable that changes introduced by the Visual Builder be persisted in
 +
the application's configuration file so that they can be "remembered" at the
 +
next launch.
 +
 
=== Menu ===  
 
=== Menu ===  
 
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Revision as of 14:11, 19 September 2006

Contents

Feature requests for geWorkbench

General Features

  • Mantis 0000114: Persisting configuration settings designated through the visual builder

At present, changes to the start up configuration effected during the application execution (through the Visual Builder) do not get persisted: when the application is launched the original start up configuration is used again.

It is desirable that changes introduced by the Visual Builder be persisted in the application's configuration file so that they can be "remembered" at the next launch.

Menu


File


Edit


View


Commands


Tools


Help



Project Folders



Markers



Arrays/Phenotypes



Sets



FASTA sequences

Promoter


Sequence Panel


Position Histogram


Simulation


Network Generator

Phenotype & Optimizer Options

Interactions Display

5. Sequence alignment


BLAST

HMM

Other

Pattern discovery


Associations


caScript


Dataset annotations


data history


Experiment Info



Microarray data

The following panels/functionalities are requested specifically for Microarray data:

Simulation


Network browser


Interactions


Aracne


Tabular Microarray Viewer


Sequence Retriever


Synteny


Microarray viewer


Gene Ontology


GSEA


Reverser Engineering


Scatter Plot


caBIO pathways


Marker Annotations


Color Mosaic Expression Profiles


Expression Value Distribution


Experiment Info


Synteny Parameters


Program

MUMmer

Dots

Synteny map

Genome selections

Annotations

Normalization


Housekeeping Genes Normalizer

Log2 Transformation

Marker-based centering

Mean-variance normalizer

Array-based centering

Missing value computations

Threshold Normalizer

Quantile Normalization

T-Profiler


Analysis

The following analysis functions are requested:

  • ANOVA

Fast Hierarchical clustering

Matrix reduce

Svm classifier

Slmr classifier

SOM

T-test

Multi T-test

Associations


caScript


Dataset Annotations


Filtering


Deviation filter

Affy detection call filter

Expression threshold filter

Genepix flags filter

Missing value filter

2 channel threshold filter

Dataset History