Difference between revisions of "Talk:Home"

(General Features)
(Feature requests for geWorkbench)
 
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== Feature requests for geWorkbench ==
 
=== General Features ===
 
* Mantis 0000114: Persisting configuration settings designated through the visual builder
 
At present, changes to the start up configuration effected during the
 
application execution (through the Visual Builder) do not get persisted: when
 
the application is launched the original start up configuration is used again.
 
  
It is desirable that changes introduced by the Visual Builder be persisted in
 
the application's configuration file so that they can be "remembered" at the
 
next launch.
 
 
* Mantis 0000115: Choosing among available application "flavors"
 
During application launch, a start up window (which the user can opt to hide
 
for subsequent application invocations) should prompt the user to select one
 
among the available application configuration "flavors". This functionality
 
should be available not only at start up but also from within the application,
 
through a "Preferences" type of menu option.
 
 
* Mantis 0000077: Context sensitive online help
 
We need to make online help available in a context sensitive manner: from
 
within a component, a user should be able (using F1 or by pressing a Help
 
button) get access to the online help associated with the component.
 
 
=== Menu ===
 
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==== File ====
 
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==== Edit ====
 
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==== View ====
 
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==== Commands ====
 
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==== Tools ====
 
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==== Help ====
 
 
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===  Project Folders ===
 
 
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=== Markers ===
 
 
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=== Arrays/Phenotypes ===
 
 
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=== Sets ===
 
 
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=== FASTA sequences ===
 
==== Promoter ====
 
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==== Sequence Panel ====
 
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==== Position Histogram ====
 
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==== Simulation ====
 
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===== Network Generator =====
 
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===== Phenotype & Optimizer Options =====
 
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===== Interactions Display =====
 
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==== 5. Sequence alignment ====
 
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===== BLAST =====
 
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===== HMM =====
 
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===== Other =====
 
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==== Pattern discovery ====
 
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==== Associations ====
 
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==== caScript ====
 
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==== Dataset annotations ====
 
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==== data history ====
 
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==== Experiment Info ====
 
 
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=== '''Microarray data''' ===
 
The following panels/functionalities are requested specifically for Microarray data:
 
*
 
==== Simulation ====
 
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==== Network browser ====
 
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==== Interactions ====
 
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==== Aracne ====
 
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==== Tabular Microarray Viewer ====
 
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==== Sequence Retriever ====
 
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==== Synteny ====
 
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==== Microarray viewer ====
 
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==== Gene Ontology ====
 
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==== GSEA ====
 
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==== Reverser Engineering ====
 
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==== Scatter Plot ====
 
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==== caBIO pathways ====
 
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==== Marker Annotations ====
 
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==== Color Mosaic Expression Profiles ==== 
 
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==== Expression Value Distribution ====
 
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==== Experiment Info ====
 
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==== Synteny Parameters ====
 
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===== Program =====
 
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====== MUMmer ======
 
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====== Dots ======
 
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====== Synteny map ======
 
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===== Genome selections =====
 
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===== Annotations =====
 
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==== Normalization ====
 
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===== Housekeeping Genes Normalizer =====
 
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===== Log2 Transformation =====
 
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===== Marker-based centering =====
 
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===== Mean-variance normalizer =====
 
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===== Array-based centering =====
 
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===== Missing value computations =====
 
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===== Threshold Normalizer =====
 
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===== Quantile Normalization =====
 
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==== T-Profiler ====
 
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==== Analysis ====
 
The following analysis functions are requested:
 
* ANOVA
 
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===== Fast Hierarchical clustering =====
 
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===== Matrix reduce =====
 
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===== Svm classifier =====
 
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===== Slmr classifier =====
 
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===== SOM =====
 
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===== T-test =====
 
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===== Multi T-test =====
 
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==== Associations ====
 
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==== caScript ====
 
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==== Dataset Annotations ====
 
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==== Filtering ====
 
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===== Deviation filter =====
 
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===== Affy detection call filter =====
 
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===== Expression threshold filter =====
 
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===== Genepix flags filter =====
 
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===== Missing value filter =====
 
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===== 2 channel threshold filter =====
 
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==== Dataset History ====
 
* Mantis: 0000300: need array info
 
We should be able to display information about a microarray - the chip type, the
 
number of markers in the dataset vs in the chip definition.
 
 
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Latest revision as of 14:20, 19 September 2006