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Revision as of 13:59, 19 September 2006 by Bjagla (talk | contribs) (Menu)

Contents

Feature requests for geWorkbench

Menu

File

Edit

View

Commands

Tools

Help

FASTA sequences

Promoter

Sequence Panel

Position Histogram

Simulation

Network Generator
Phenotype & Optimizer Options
Interactions Display

5. Sequence alignment

BLAST
HMM
Other

Pattern discovery

Associations

caScript

Dataset annotations

data history

Experiment Info

Microarray data

Simulation

Network browser

Interactions

Aracne

Tabular Microarray Viewer

Sequence Retriever

Synteny

Microarray viewer

Gene Ontology

GSEA

Reverser Engineering

Scatter Plot

caBIO pathways

Marker Annotations

Color Mosaic Expression Profiles

Expression Value Distribution

Experiment Info

Synteny Parameters

Program
MUMmer
Dots
Synteny map
Genome selections
Annotations

Normalization

Housekeeping Genes Normalizer
Log2 Transformation
Marker-based centering
Mean-variance normalizer
Array-based centering
Missing value computations
Threshold Normalizer
Quantile Normalization

T-Profiler

Analysis

Fast Hierarchical clustering
Matrix reduce
Svm classifier
Slmr classifier
SOM
T-test
Multi T-test

Associations

caScript

Dataset Annotations

Filtering

Deviation filter
Affy detection call filter
Expression threshold filter
Genepix flags filter
Missing value filter
2 channel threshold filter

Dataset History