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Revision as of 14:11, 19 September 2006 by Bjagla (talk | contribs) (→Feature requests for geWorkbench)
Contents
- 1 Feature requests for geWorkbench
- 1.1 General Features
- 1.2 Menu
- 1.3 Project Folders
- 1.4 Markers
- 1.5 Arrays/Phenotypes
- 1.6 Sets
- 1.7 FASTA sequences
- 1.8 Microarray data
- 1.8.1 Simulation
- 1.8.2 Network browser
- 1.8.3 Interactions
- 1.8.4 Aracne
- 1.8.5 Tabular Microarray Viewer
- 1.8.6 Sequence Retriever
- 1.8.7 Synteny
- 1.8.8 Microarray viewer
- 1.8.9 Gene Ontology
- 1.8.10 GSEA
- 1.8.11 Reverser Engineering
- 1.8.12 Scatter Plot
- 1.8.13 caBIO pathways
- 1.8.14 Marker Annotations
- 1.8.15 Color Mosaic Expression Profiles
- 1.8.16 Expression Value Distribution
- 1.8.17 Experiment Info
- 1.8.18 Synteny Parameters
- 1.8.19 Normalization
- 1.8.20 T-Profiler
- 1.8.21 Analysis
- 1.8.22 Associations
- 1.8.23 caScript
- 1.8.24 Dataset Annotations
- 1.8.25 Filtering
- 1.8.26 Dataset History
Feature requests for geWorkbench
General Features
- Mantis 0000114: Persisting configuration settings designated through the visual builder
At present, changes to the start up configuration effected during the application execution (through the Visual Builder) do not get persisted: when the application is launched the original start up configuration is used again.
It is desirable that changes introduced by the Visual Builder be persisted in the application's configuration file so that they can be "remembered" at the next launch.
Menu
File
Edit
View
Commands
Tools
Help
Project Folders
Markers
Arrays/Phenotypes
Sets
FASTA sequences
Promoter
Sequence Panel
Position Histogram
Simulation
Network Generator
Phenotype & Optimizer Options
Interactions Display
5. Sequence alignment
BLAST
HMM
Other
Pattern discovery
Associations
caScript
Dataset annotations
data history
Experiment Info
Microarray data
The following panels/functionalities are requested specifically for Microarray data:
Simulation
Network browser
Interactions
Aracne
Tabular Microarray Viewer
Sequence Retriever
Synteny
Microarray viewer
Gene Ontology
GSEA
Reverser Engineering
Scatter Plot
caBIO pathways
Marker Annotations
Color Mosaic Expression Profiles
Expression Value Distribution
Experiment Info
Synteny Parameters
Program
MUMmer
Dots
Synteny map
Genome selections
Annotations
Normalization
Housekeeping Genes Normalizer
Log2 Transformation
Marker-based centering
Mean-variance normalizer
Array-based centering
Missing value computations
Threshold Normalizer
Quantile Normalization
T-Profiler
Analysis
The following analysis functions are requested:
- ANOVA
