Revision as of 12:21, 30 January 2006 (view source) Daly (talk | contribs) ← Older edit		Revision as of 13:17, 30 January 2006 (view source) Daly (talk | contribs) Newer edit →
Line 2:		Line 2:
	Below is the list of available plugins.		Below is the list of available plugins.
		+
		+	==Microarray Visualization==
		+	{|style="border: 1px solid lightGray"
		+	!Plugin||Description||Compatibility
		+	|-
		+	|Color Mosaic||Displays heat maps for microarray expression data, organized by phenotypic or gene groupings.||Verified to work on 3.0
		+	|-
		+
		+	|caBIO Pathways||Displays BioCarta pathway diagrams for selected genes.||Verified to work on 3.0
		+	|-
		+
		+
		+	Dendrogram Displays tree-structured diagrams (dendrograms) reflecting the results of hierarchical clustering analysis.
		+	Expression Profiles Displays the expression of genes across several arrays/ hybridizations.
		+	Image Viewer Displays snapshot images taken from whole screen views.
		+	Marker Annotations Allows users to retrieve and display CGAP annotations for genes within a marker panel.
		+	Microarray Panel Displays expression measurements as spots over a red-green color spectrum.
		+	SOM Clusters Displays the results of self-organizing map cluster analysis.
		+	Tabular Microarray Panel Presents the numerical values of the expression measurements in a table format; each row represents an individual probe and the columns display the signal and background intensities and intensity ratios
		+
	==Normalizer==		==Normalizer==

---

Revision as of 13:17, 30 January 2006

Plugins are sets of pluggable components for geWorkbench.

Below is the list of available plugins.

Microarray Visualization

Dendrogram Displays tree-structured diagrams (dendrograms) reflecting the results of hierarchical clustering analysis. Expression Profiles Displays the expression of genes across several arrays/ hybridizations. Image Viewer Displays snapshot images taken from whole screen views. Marker Annotations Allows users to retrieve and display CGAP annotations for genes within a marker panel. Microarray Panel Displays expression measurements as spots over a red-green color spectrum. SOM Clusters Displays the results of self-organizing map cluster analysis. Tabular Microarray Panel Presents the numerical values of the expression measurements in a table format; each row represents an individual probe and the columns display the signal and background intensities and intensity ratios

Normalizer

Plugin	Description	Compatibility
Color Mosaic	Displays heat maps for microarray expression data, organized by phenotypic or gene groupings.	Verified to work on 3.0
caBIO Pathways	Displays BioCarta pathway diagrams for selected genes.	Verified to work on 3.0

Plugin	Description	Compatibility
Color Mosaic	Displays heat maps for microarray expression data, organized by phenotypic or gene groupings.	Verified to work on 3.0
Clustering	Contains analysis components to perform hierarchical clustering self-organizing maps clustering on microarray expression data.	Verified to work on 3.0
caScript	A scripting language engine for geWorkbench.	Not yet verified.

Annoatation

Network Generation

Plugin	Description	Compatibility
Color Mosaic	Displays heat maps for microarray expression data, organized by phenotypic or gene groupings.	Verified to work on 3.0

Analysis

Plugin	Description	Compatibility
Color Mosaic	Displays heat maps for microarray expression data, organized by phenotypic or gene groupings.	Verified to work on 3.0

Plugin	Description	Compatibility
Color Mosaic	Displays heat maps for microarray expression data, organized by phenotypic or gene groupings.	Verified to work on 3.0