Difference between revisions of "Test file collection"

(→‎Test files for accuracy determination)
 
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= The following is a list of test data with a short description on where to find the data and why it is here =
 
= The following is a list of test data with a short description on where to find the data and why it is here =
 
== Test files for accuracy determination ==
 
== Test files for accuracy determination ==
−
Files can be found at \\genome8\Public\baj2107\Test data\accuracy
+
Files can be found at \\genome8\Public\baj2107\TestData\accuracy
−
 
+
{| border="1"
 +
! file type || file name || description
 +
|-
 +
|Netboost EdgeList ||  ||
 +
|-
 +
|MAS5/GCOS ||  ||
 +
|-
 +
|RMA/TAB delimited ||  ||
 +
|-
 +
|.CEL ||  ||
 +
|-
 +
|PDB ||  ||
 +
|-
 +
|GenePix ||  ||
 +
|-
 +
|FASTA ||  ||
 +
|-
 +
|}
 
== Test files for performance evaluation ==
 
== Test files for performance evaluation ==
 +
files can be found at \\genome8\Public\baj2107\TestData\performance
 +
{| border="1"
 +
! file type || file name || description
 +
|-
 +
|Netboost EdgeList ||  ||
 +
|-
 +
|MAS5/GCOS ||  ||
 +
|-
 +
|RMA/TAB delimited || GSE1133-HS_133A.tab-del.txt  || GEO data GSE1133. ~158 arrays, ~22,000 markers
 +
|-
 +
|.CEL ||  ||
 +
|-
 +
|PDB ||  ||
 +
|-
 +
|GenePix ||  ||
 +
|-
 +
|FASTA ||  ||
 +
|-
 +
|}
 
== Files with errors in the file format ==
 
== Files with errors in the file format ==
 +
files can be found at \\genome8\Public\baj2107\TestData\bad_format
 +
 +
{| border="1"
 +
! file type || file name || description
 +
|-
 +
|Netboost EdgeList ||  ||
 +
|-
 +
|MAS5/GCOS ||  ||
 +
|-
 +
|RMA/TAB delimited ||  ||
 +
|-
 +
|.CEL ||  ||
 +
|-
 +
|PDB ||  ||
 +
|-
 +
|GenePix ||  ||
 +
|-
 +
|FASTA ||  ||
 +
|-
 +
|}
 
== extreme cases with high/low values ==
 
== extreme cases with high/low values ==
 +
files can be found at \\genome8\Public\baj2107\TestData\boundary_cases
 +
{| border="1"
 +
! file type || file name || description
 +
|-
 +
|Netboost EdgeList ||  ||
 +
|-
 +
|MAS5/GCOS ||  ||
 +
|-
 +
|RMA/TAB delimited ||  ||
 +
|-
 +
|.CEL ||  ||
 +
|-
 +
|PDB ||  ||
 +
|-
 +
|GenePix ||  ||
 +
|-
 +
|FASTA ||  ||
 +
|-
 +
|}

Latest revision as of 14:14, 13 September 2007

test file collection | Comments on geWorkbench | SAEC notes | SAEC protocol | SAEC executive summary | Other


The following is a list of test data with a short description on where to find the data and why it is here

Test files for accuracy determination

Files can be found at \\genome8\Public\baj2107\TestData\accuracy

file type file name description
Netboost EdgeList
MAS5/GCOS
RMA/TAB delimited
.CEL
PDB
GenePix
FASTA

Test files for performance evaluation

files can be found at \\genome8\Public\baj2107\TestData\performance

file type file name description
Netboost EdgeList
MAS5/GCOS
RMA/TAB delimited GSE1133-HS_133A.tab-del.txt GEO data GSE1133. ~158 arrays, ~22,000 markers
.CEL
PDB
GenePix
FASTA

Files with errors in the file format

files can be found at \\genome8\Public\baj2107\TestData\bad_format

file type file name description
Netboost EdgeList
MAS5/GCOS
RMA/TAB delimited
.CEL
PDB
GenePix
FASTA

extreme cases with high/low values

files can be found at \\genome8\Public\baj2107\TestData\boundary_cases

file type file name description
Netboost EdgeList
MAS5/GCOS
RMA/TAB delimited
.CEL
PDB
GenePix
FASTA
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