Difference between revisions of "Test file collection"
(→Files with errors in the file format) |
|||
(5 intermediate revisions by the same user not shown) | |||
Line 2: | Line 2: | ||
= The following is a list of test data with a short description on where to find the data and why it is here = | = The following is a list of test data with a short description on where to find the data and why it is here = | ||
== Test files for accuracy determination == | == Test files for accuracy determination == | ||
− | Files can be found at \\genome8\Public\baj2107\ | + | Files can be found at \\genome8\Public\baj2107\TestData\accuracy |
− | + | {| border="1" | |
+ | ! file type || file name || description | ||
+ | |- | ||
+ | |Netboost EdgeList || || | ||
+ | |- | ||
+ | |MAS5/GCOS || || | ||
+ | |- | ||
+ | |RMA/TAB delimited || || | ||
+ | |- | ||
+ | |.CEL || || | ||
+ | |- | ||
+ | |PDB || || | ||
+ | |- | ||
+ | |GenePix || || | ||
+ | |- | ||
+ | |FASTA || || | ||
+ | |- | ||
+ | |} | ||
== Test files for performance evaluation == | == Test files for performance evaluation == | ||
− | files can be found at \\genome8\Public\baj2107\ | + | files can be found at \\genome8\Public\baj2107\TestData\performance |
− | + | {| border="1" | |
+ | ! file type || file name || description | ||
+ | |- | ||
+ | |Netboost EdgeList || || | ||
+ | |- | ||
+ | |MAS5/GCOS || || | ||
+ | |- | ||
+ | |RMA/TAB delimited || GSE1133-HS_133A.tab-del.txt || GEO data GSE1133. ~158 arrays, ~22,000 markers | ||
+ | |- | ||
+ | |.CEL || || | ||
+ | |- | ||
+ | |PDB || || | ||
+ | |- | ||
+ | |GenePix || || | ||
+ | |- | ||
+ | |FASTA || || | ||
+ | |- | ||
+ | |} | ||
== Files with errors in the file format == | == Files with errors in the file format == | ||
− | files can be found at \\genome8\Public\baj2107\ | + | files can be found at \\genome8\Public\baj2107\TestData\bad_format |
+ | {| border="1" | ||
+ | ! file type || file name || description | ||
+ | |- | ||
+ | |Netboost EdgeList || || | ||
+ | |- | ||
+ | |MAS5/GCOS || || | ||
+ | |- | ||
+ | |RMA/TAB delimited || || | ||
+ | |- | ||
+ | |.CEL || || | ||
+ | |- | ||
+ | |PDB || || | ||
+ | |- | ||
+ | |GenePix || || | ||
+ | |- | ||
+ | |FASTA || || | ||
+ | |- | ||
+ | |} | ||
== extreme cases with high/low values == | == extreme cases with high/low values == | ||
+ | files can be found at \\genome8\Public\baj2107\TestData\boundary_cases | ||
+ | {| border="1" | ||
+ | ! file type || file name || description | ||
+ | |- | ||
+ | |Netboost EdgeList || || | ||
+ | |- | ||
+ | |MAS5/GCOS || || | ||
+ | |- | ||
+ | |RMA/TAB delimited || || | ||
+ | |- | ||
+ | |.CEL || || | ||
+ | |- | ||
+ | |PDB || || | ||
+ | |- | ||
+ | |GenePix || || | ||
+ | |- | ||
+ | |FASTA || || | ||
+ | |- | ||
+ | |} |
Latest revision as of 14:14, 13 September 2007
test file collection | Comments on geWorkbench | SAEC notes | SAEC protocol | SAEC executive summary | Other |
Contents
The following is a list of test data with a short description on where to find the data and why it is here
Test files for accuracy determination
Files can be found at \\genome8\Public\baj2107\TestData\accuracy
file type | file name | description |
---|---|---|
Netboost EdgeList | ||
MAS5/GCOS | ||
RMA/TAB delimited | ||
.CEL | ||
PDB | ||
GenePix | ||
FASTA |
Test files for performance evaluation
files can be found at \\genome8\Public\baj2107\TestData\performance
file type | file name | description |
---|---|---|
Netboost EdgeList | ||
MAS5/GCOS | ||
RMA/TAB delimited | GSE1133-HS_133A.tab-del.txt | GEO data GSE1133. ~158 arrays, ~22,000 markers |
.CEL | ||
PDB | ||
GenePix | ||
FASTA |
Files with errors in the file format
files can be found at \\genome8\Public\baj2107\TestData\bad_format
file type | file name | description |
---|---|---|
Netboost EdgeList | ||
MAS5/GCOS | ||
RMA/TAB delimited | ||
.CEL | ||
PDB | ||
GenePix | ||
FASTA |
extreme cases with high/low values
files can be found at \\genome8\Public\baj2107\TestData\boundary_cases
file type | file name | description |
---|---|---|
Netboost EdgeList | ||
MAS5/GCOS | ||
RMA/TAB delimited | ||
.CEL | ||
PDB | ||
GenePix | ||
FASTA |