Difference between revisions of "Test file collection"
(→The following is a list of test data with a short description on where to find the data and why it is here) |
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== Test files for accuracy determination == | == Test files for accuracy determination == | ||
Files can be found at \\genome8\Public\baj2107\TestData\accuracy | Files can be found at \\genome8\Public\baj2107\TestData\accuracy | ||
| − | + | {| border="1" | |
| + | ! file type || file name || description | ||
| + | |- | ||
| + | |Netboost EdgeList || || | ||
| + | |- | ||
| + | |MAS5/GCOS || || | ||
| + | |- | ||
| + | |RMA/TAB delimited || || | ||
| + | |- | ||
| + | |.CEL || || | ||
| + | |- | ||
| + | |PDB || || | ||
| + | |- | ||
| + | |GenePix || || | ||
| + | |- | ||
| + | |FASTA || || | ||
| + | |- | ||
| + | |} | ||
== Test files for performance evaluation == | == Test files for performance evaluation == | ||
files can be found at \\genome8\Public\baj2107\TestData\performance | files can be found at \\genome8\Public\baj2107\TestData\performance | ||
| − | + | {| border="1" | |
| + | ! file type || file name || description | ||
| + | |- | ||
| + | |Netboost EdgeList || || | ||
| + | |- | ||
| + | |MAS5/GCOS || || | ||
| + | |- | ||
| + | |RMA/TAB delimited || GSE1133-HS_133A.tab-del.txt || GEO data GSE1133. ~158 arrays, ~22,000 markers | ||
| + | |- | ||
| + | |.CEL || || | ||
| + | |- | ||
| + | |PDB || || | ||
| + | |- | ||
| + | |GenePix || || | ||
| + | |- | ||
| + | |FASTA || || | ||
| + | |- | ||
| + | |} | ||
== Files with errors in the file format == | == Files with errors in the file format == | ||
files can be found at \\genome8\Public\baj2107\TestData\bad_format | files can be found at \\genome8\Public\baj2107\TestData\bad_format | ||
| + | {| border="1" | ||
| + | ! file type || file name || description | ||
| + | |- | ||
| + | |Netboost EdgeList || || | ||
| + | |- | ||
| + | |MAS5/GCOS || || | ||
| + | |- | ||
| + | |RMA/TAB delimited || || | ||
| + | |- | ||
| + | |.CEL || || | ||
| + | |- | ||
| + | |PDB || || | ||
| + | |- | ||
| + | |GenePix || || | ||
| + | |- | ||
| + | |FASTA || || | ||
| + | |- | ||
| + | |} | ||
== extreme cases with high/low values == | == extreme cases with high/low values == | ||
files can be found at \\genome8\Public\baj2107\TestData\boundary_cases | files can be found at \\genome8\Public\baj2107\TestData\boundary_cases | ||
| + | {| border="1" | ||
| + | ! file type || file name || description | ||
| + | |- | ||
| + | |Netboost EdgeList || || | ||
| + | |- | ||
| + | |MAS5/GCOS || || | ||
| + | |- | ||
| + | |RMA/TAB delimited || || | ||
| + | |- | ||
| + | |.CEL || || | ||
| + | |- | ||
| + | |PDB || || | ||
| + | |- | ||
| + | |GenePix || || | ||
| + | |- | ||
| + | |FASTA || || | ||
| + | |- | ||
| + | |} | ||
Latest revision as of 14:14, 13 September 2007
|
test file collection | Comments on geWorkbench | SAEC notes | SAEC protocol | SAEC executive summary | Other |
Contents
The following is a list of test data with a short description on where to find the data and why it is here
Test files for accuracy determination
Files can be found at \\genome8\Public\baj2107\TestData\accuracy
| file type | file name | description |
|---|---|---|
| Netboost EdgeList | ||
| MAS5/GCOS | ||
| RMA/TAB delimited | ||
| .CEL | ||
| PDB | ||
| GenePix | ||
| FASTA |
Test files for performance evaluation
files can be found at \\genome8\Public\baj2107\TestData\performance
| file type | file name | description |
|---|---|---|
| Netboost EdgeList | ||
| MAS5/GCOS | ||
| RMA/TAB delimited | GSE1133-HS_133A.tab-del.txt | GEO data GSE1133. ~158 arrays, ~22,000 markers |
| .CEL | ||
| PDB | ||
| GenePix | ||
| FASTA |
Files with errors in the file format
files can be found at \\genome8\Public\baj2107\TestData\bad_format
| file type | file name | description |
|---|---|---|
| Netboost EdgeList | ||
| MAS5/GCOS | ||
| RMA/TAB delimited | ||
| .CEL | ||
| PDB | ||
| GenePix | ||
| FASTA |
extreme cases with high/low values
files can be found at \\genome8\Public\baj2107\TestData\boundary_cases
| file type | file name | description |
|---|---|---|
| Netboost EdgeList | ||
| MAS5/GCOS | ||
| RMA/TAB delimited | ||
| .CEL | ||
| PDB | ||
| GenePix | ||
| FASTA |
