Difference between revisions of "User:Daly"
| Line 23: | Line 23: | ||
* T Test | * T Test | ||
* Multi Test | * Multi Test | ||
| − | * Volcano Plot | + | ** Volcano Plot |
| + | ** Color Mosaic | ||
== Regulatory Network == | == Regulatory Network == | ||
* Reverse Engineering | * Reverse Engineering | ||
| Line 37: | Line 38: | ||
** Other | ** Other | ||
==Pattern Discovery== | ==Pattern Discovery== | ||
| − | * Position | + | * Position Histogram |
== Promoter Analysis== | == Promoter Analysis== | ||
Revision as of 16:04, 3 February 2006
Contents
- 1 Tutorials
- 1.1 Getting Started
- 1.2 Loading Data
- 1.3 Working with Marker and Phenotype Panels
- 1.4 Visualize Gene Expression
- 1.5 Filter and Normalize Data
- 1.6 Clustering Gene Expression Data
- 1.7 Differential Expression
- 1.8 Regulatory Network
- 1.9 Integrated Annotation Information
- 1.10 Enrichment Analysis
- 1.11 Sequence Analysis
- 1.12 Pattern Discovery
- 1.13 Promoter Analysis
Tutorials
The following { insert description)
Getting Started
- Starting the application
- GUI elements
- Panels
- Navigation
Loading Data
- Data formats
Working with Marker and Phenotype Panels
- Creating panels
- Visualizing
Visualize Gene Expression
Filter and Normalize Data
Clustering Gene Expression Data
- Hierarchical Clustering
- Self Organizing Map (SOM)
Differential Expression
- T Test
- Multi Test
- Volcano Plot
- Color Mosaic
Regulatory Network
- Reverse Engineering
- Cytoscape
Integrated Annotation Information
Enrichment Analysis
- Go Term
- Go Miner
Sequence Analysis
- Sequence Retrieval
- Sequence Homology Analysis
- Blast
- Other
Pattern Discovery
- Position Histogram
