Difference between revisions of "Test file collection"
(→The following is a list of test data with a short description on where to find the data and why it is here) |
(→The following is a list of test data with a short description on where to find the data and why it is here) |
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== Test files for accuracy determination == | == Test files for accuracy determination == | ||
Files can be found at \\genome8\Public\baj2107\TestData\accuracy | Files can be found at \\genome8\Public\baj2107\TestData\accuracy | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>file type</th> | ||
+ | <th>file name</th> | ||
+ | <th>description</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Netboost EdgeList</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>MAS5/GCOS</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>RMA/TAB delimited</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>.CEL</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PDB</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>GenePix</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>FASTA</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | |||
+ | </table> | ||
== Test files for performance evaluation == | == Test files for performance evaluation == | ||
files can be found at \\genome8\Public\baj2107\TestData\performance | files can be found at \\genome8\Public\baj2107\TestData\performance | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <th>file type</th> | ||
+ | <th>file name</th> | ||
+ | <th>description</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Netboost EdgeList</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>MAS5/GCOS</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>RMA/TAB delimited</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>.CEL</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PDB</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>GenePix</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>FASTA</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | |||
+ | </table> | ||
== Files with errors in the file format == | == Files with errors in the file format == | ||
files can be found at \\genome8\Public\baj2107\TestData\bad_format | files can be found at \\genome8\Public\baj2107\TestData\bad_format | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <th>file type</th> | ||
+ | <th>file name</th> | ||
+ | <th>description</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Netboost EdgeList</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>MAS5/GCOS</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>RMA/TAB delimited</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>.CEL</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PDB</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>GenePix</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>FASTA</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | |||
+ | </table> | ||
== extreme cases with high/low values == | == extreme cases with high/low values == | ||
files can be found at \\genome8\Public\baj2107\TestData\boundary_cases | files can be found at \\genome8\Public\baj2107\TestData\boundary_cases | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th>file type</th> | ||
+ | <th>file name</th> | ||
+ | <th>description</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Netboost EdgeList</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>MAS5/GCOS</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>RMA/TAB delimited</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>.CEL</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PDB</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>GenePix</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>FASTA</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | |||
+ | </table> |
Revision as of 09:00, 12 September 2007
test file collection | Comments on geWorkbench | SAEC notes | SAEC protocol | SAEC executive summary | Other |
Contents
The following is a list of test data with a short description on where to find the data and why it is here
Test files for accuracy determination
Files can be found at \\genome8\Public\baj2107\TestData\accuracy
file type | file name | description |
---|---|---|
Netboost EdgeList | ||
MAS5/GCOS | ||
RMA/TAB delimited | ||
.CEL | ||
PDB | ||
GenePix | ||
FASTA |
Test files for performance evaluation
files can be found at \\genome8\Public\baj2107\TestData\performance
file type | file name | description |
---|---|---|
Netboost EdgeList | ||
MAS5/GCOS | ||
RMA/TAB delimited | ||
.CEL | ||
PDB | ||
GenePix | ||
FASTA |
Files with errors in the file format
files can be found at \\genome8\Public\baj2107\TestData\bad_format
file type | file name | description |
---|---|---|
Netboost EdgeList | ||
MAS5/GCOS | ||
RMA/TAB delimited | ||
.CEL | ||
PDB | ||
GenePix | ||
FASTA |
extreme cases with high/low values
files can be found at \\genome8\Public\baj2107\TestData\boundary_cases
file type | file name | description |
---|---|---|
Netboost EdgeList | ||
MAS5/GCOS | ||
RMA/TAB delimited | ||
.CEL | ||
PDB | ||
GenePix | ||
FASTA |