Difference between revisions of "Plugins"
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Below is the list of available plugins. | Below is the list of available plugins. | ||
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| + | ==Microarray Visualization== | ||
| + | {|style="border: 1px solid lightGray" | ||
| + | !Plugin||Description||Compatibility | ||
| + | |- | ||
| + | |Color Mosaic||Displays heat maps for microarray expression data, organized by phenotypic or gene groupings.||Verified to work on 3.0 | ||
| + | |- | ||
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| + | |caBIO Pathways||Displays BioCarta pathway diagrams for selected genes.||Verified to work on 3.0 | ||
| + | |- | ||
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| + | Dendrogram Displays tree-structured diagrams (dendrograms) reflecting the results of hierarchical clustering analysis. | ||
| + | Expression Profiles Displays the expression of genes across several arrays/ hybridizations. | ||
| + | Image Viewer Displays snapshot images taken from whole screen views. | ||
| + | Marker Annotations Allows users to retrieve and display CGAP annotations for genes within a marker panel. | ||
| + | Microarray Panel Displays expression measurements as spots over a red-green color spectrum. | ||
| + | SOM Clusters Displays the results of self-organizing map cluster analysis. | ||
| + | Tabular Microarray Panel Presents the numerical values of the expression measurements in a table format; each row represents an individual probe and the columns display the signal and background intensities and intensity ratios | ||
| + | |||
==Normalizer== | ==Normalizer== | ||
Revision as of 13:17, 30 January 2006
Plugins are sets of pluggable components for geWorkbench.
Below is the list of available plugins.
Contents
[hide]Microarray Visualization
Dendrogram Displays tree-structured diagrams (dendrograms) reflecting the results of hierarchical clustering analysis. Expression Profiles Displays the expression of genes across several arrays/ hybridizations. Image Viewer Displays snapshot images taken from whole screen views. Marker Annotations Allows users to retrieve and display CGAP annotations for genes within a marker panel. Microarray Panel Displays expression measurements as spots over a red-green color spectrum. SOM Clusters Displays the results of self-organizing map cluster analysis. Tabular Microarray Panel Presents the numerical values of the expression measurements in a table format; each row represents an individual probe and the columns display the signal and background intensities and intensity ratiosNormalizer
| Plugin | Description | Compatibility |
|---|---|---|
| Color Mosaic | Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. | Verified to work on 3.0 |
| caBIO Pathways | Displays BioCarta pathway diagrams for selected genes. | Verified to work on 3.0 |
| Plugin | Description | Compatibility |
|---|---|---|
| Color Mosaic | Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. | Verified to work on 3.0 |
| Clustering | Contains analysis components to perform hierarchical clustering self-organizing maps clustering on microarray expression data. | Verified to work on 3.0 |
| caScript | A scripting language engine for geWorkbench. | Not yet verified. |
Annoatation
Network Generation
| Plugin | Description | Compatibility |
|---|---|---|
| Color Mosaic | Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. | Verified to work on 3.0 |
Analysis
| Plugin | Description | Compatibility |
|---|---|---|
| Color Mosaic | Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. | Verified to work on 3.0 |
| Plugin | Description | Compatibility |
|---|---|---|
| Color Mosaic | Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. | Verified to work on 3.0 |
