Difference between revisions of "Plugins"
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| − | |caBIO Pathways||Displays BioCarta pathway diagrams for selected genes.|| | + | |caBIO Pathways||Displays BioCarta pathway diagrams for selected genes.||TBD |
| + | |- | ||
| + | |Dendrogram||A tree-structured diagrams reflecting the results of hierarchical clustering analysis.||TBD | ||
| + | |- | ||
| + | |Expression Profiles||Displays the expression of genes across several arrays/ hybridizations.||TBD | ||
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| + | |- | ||
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| + | |Image Viewer||Mechanism to display snapshot images taken in the application.||TBD | ||
| + | |- | ||
| + | |- | ||
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| + | |Marker Annotations||Allows users to retrieve and display CGAP annotations for genes within a marker panel.||TBD | ||
| + | |- | ||
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| + | |Microarray Panel||The image displays color-coded levels of gene expression,using a color scale varying gradually from red (up-regulated) through black (no change) to green (down-regulated).|| TBD | ||
| + | |- | ||
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| − | + | |SOM Clusters ||Displays the results of self-organizing map cluster analysis.||TBD | |
| − | + | |- | |
| − | + | |- | |
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| − | SOM Clusters Displays the results of self-organizing map cluster analysis. | ||
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| + | |Tabular Microarray Panel||Presents the numerical values of the expression measurements in a table format; each row represents an individual probe and the columns display the signal and background intensities and intensity ratios.|| | ||
| + | TBD | ||
| + | |- | ||
==Normalizer== | ==Normalizer== | ||
Revision as of 13:31, 30 January 2006
Plugins are sets of pluggable components for geWorkbench.
Below is the list of available plugins.
Microarray Visualization
| Plugin | Description | Compatibility |
|---|---|---|
| Color Mosaic | Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. | Verified to work on 3.0 |
| caBIO Pathways | Displays BioCarta pathway diagrams for selected genes. | TBD |
| Dendrogram | A tree-structured diagrams reflecting the results of hierarchical clustering analysis. | TBD |
| Expression Profiles | Displays the expression of genes across several arrays/ hybridizations. | TBD |
| Image Viewer | Mechanism to display snapshot images taken in the application. | TBD |
| Marker Annotations | Allows users to retrieve and display CGAP annotations for genes within a marker panel. | TBD |
| Microarray Panel | The image displays color-coded levels of gene expression,using a color scale varying gradually from red (up-regulated) through black (no change) to green (down-regulated). | TBD |
| SOM Clusters | Displays the results of self-organizing map cluster analysis. | TBD |
| Tabular Microarray Panel | Presents the numerical values of the expression measurements in a table format; each row represents an individual probe and the columns display the signal and background intensities and intensity ratios. |
TBD |
| Plugin | Description | Compatibility |
|---|---|---|
| Color Mosaic | Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. | Verified to work on 3.0 |
| Clustering | Contains analysis components to perform hierarchical clustering self-organizing maps clustering on microarray expression data. | Verified to work on 3.0 |
| caScript | A scripting language engine for geWorkbench. | Not yet verified. |
Annoatation
| Plugin | Description | Compatibility |
|---|---|---|
| Color Mosaic | Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. | Verified to work on 3.0 |
| Plugin | Description | Compatibility |
|---|---|---|
| Color Mosaic | Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. | Verified to work on 3.0 |
| Plugin | Description | Compatibility |
|---|---|---|
| Color Mosaic | Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. | Verified to work on 3.0 |
