Difference between revisions of "Test file collection"

(→‎The following is a list of test data with a short description on where to find the data and why it is here)
(→‎The following is a list of test data with a short description on where to find the data and why it is here)
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== Test files for accuracy determination ==
 
== Test files for accuracy determination ==
 
Files can be found at \\genome8\Public\baj2107\TestData\accuracy
 
Files can be found at \\genome8\Public\baj2107\TestData\accuracy
 +
<table>
 +
  <tr>
 +
    <th>file type</th>
 +
    <th>file name</th>
 +
    <th>description</th>
 +
  </tr>
 +
  <tr>
 +
    <td>Netboost EdgeList</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>MAS5/GCOS</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>RMA/TAB delimited</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>.CEL</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>PDB</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>GenePix</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>FASTA</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
 +
</table>
  
 
== Test files for performance evaluation ==
 
== Test files for performance evaluation ==
 
files can be found at \\genome8\Public\baj2107\TestData\performance
 
files can be found at \\genome8\Public\baj2107\TestData\performance
 +
 +
<table>
 +
  <tr>
 +
    <th>file type</th>
 +
    <th>file name</th>
 +
    <th>description</th>
 +
  </tr>
 +
  <tr>
 +
    <td>Netboost EdgeList</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>MAS5/GCOS</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>RMA/TAB delimited</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>.CEL</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>PDB</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>GenePix</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>FASTA</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
 +
</table>
  
 
== Files with errors in the file format ==
 
== Files with errors in the file format ==
 
files can be found at \\genome8\Public\baj2107\TestData\bad_format
 
files can be found at \\genome8\Public\baj2107\TestData\bad_format
 +
 +
<table>
 +
  <tr>
 +
    <th>file type</th>
 +
    <th>file name</th>
 +
    <th>description</th>
 +
  </tr>
 +
  <tr>
 +
    <td>Netboost EdgeList</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>MAS5/GCOS</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>RMA/TAB delimited</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>.CEL</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>PDB</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>GenePix</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>FASTA</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
 +
</table>
  
 
== extreme cases with high/low values ==
 
== extreme cases with high/low values ==
 
files can be found at \\genome8\Public\baj2107\TestData\boundary_cases
 
files can be found at \\genome8\Public\baj2107\TestData\boundary_cases
 +
<table>
 +
  <tr>
 +
    <th>file type</th>
 +
    <th>file name</th>
 +
    <th>description</th>
 +
  </tr>
 +
  <tr>
 +
    <td>Netboost EdgeList</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>MAS5/GCOS</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>RMA/TAB delimited</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>.CEL</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>PDB</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>GenePix</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
  <tr>
 +
    <td>FASTA</td>
 +
    <td></td>
 +
    <td></td>
 +
  </tr>
 +
 +
</table>

Revision as of 09:00, 12 September 2007

test file collection | Comments on geWorkbench | SAEC notes | SAEC protocol | SAEC executive summary | Other


The following is a list of test data with a short description on where to find the data and why it is here

Test files for accuracy determination

Files can be found at \\genome8\Public\baj2107\TestData\accuracy

file type file name description
Netboost EdgeList
MAS5/GCOS
RMA/TAB delimited
.CEL
PDB
GenePix
FASTA

Test files for performance evaluation

files can be found at \\genome8\Public\baj2107\TestData\performance

file type file name description
Netboost EdgeList
MAS5/GCOS
RMA/TAB delimited
.CEL
PDB
GenePix
FASTA

Files with errors in the file format

files can be found at \\genome8\Public\baj2107\TestData\bad_format

file type file name description
Netboost EdgeList
MAS5/GCOS
RMA/TAB delimited
.CEL
PDB
GenePix
FASTA

extreme cases with high/low values

files can be found at \\genome8\Public\baj2107\TestData\boundary_cases

file type file name description
Netboost EdgeList
MAS5/GCOS
RMA/TAB delimited
.CEL
PDB
GenePix
FASTA
Retrieved from "http://wiki.c2b2.columbia.edu/workbench/index.php?title=Test_file_collection&oldid=4280"