User:Daly
Contents
- 1 Tutorials
- 1.1 Getting Started
- 1.2 Loading Data
- 1.3 Working with Marker and Phenotype Panels
- 1.4 Visualize Gene Expression
- 1.5 Filter and Normalize Data
- 1.6 Clustering Gene Expression Data
- 1.7 Differential Expression
- 1.8 Regulatory Network
- 1.9 Integrated Annotation Information
- 1.10 Enrichment Analysis
- 1.11 Sequence Analysis
- 1.12 Pattern Discovery
- 1.13 Promoter Analysis
Tutorials
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Getting Started
- Starting the application
- GUI elements
- Panels
- Navigation
Loading Data
- Data formats
Working with Marker and Phenotype Panels
- Creating panels
- Visualizing
Visualize Gene Expression
Filter and Normalize Data
Clustering Gene Expression Data
- Hierarchical Clustering
- Self Organizing Map (SOM)
Differential Expression
- T Test
- Multi Test
- Volcano Plot
Regulatory Network
- Reverse Engineering
- Cytoscape
Integrated Annotation Information
Enrichment Analysis
- Go Term
- Go Miner
Sequence Analysis
- Sequence Retrieval
- Sequence Homology Analysis
- Blast
- Other
Pattern Discovery
- Position histogram
