Plugins are sets of pluggable components for geWorkbench.
Below is the list of available plugins.
Microarray Visualization
| Plugin |
Description |
Compatibility
|
| Color Mosaic |
Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. |
Verified to work on 3.0
|
| caBIO Pathways |
Displays BioCarta pathway diagrams for selected genes. |
Verified to work on 3.0
|
Dendrogram Displays tree-structured diagrams (dendrograms) reflecting the results of hierarchical clustering analysis.
Expression Profiles Displays the expression of genes across several arrays/ hybridizations.
Image Viewer Displays snapshot images taken from whole screen views.
Marker Annotations Allows users to retrieve and display CGAP annotations for genes within a marker panel.
Microarray Panel Displays expression measurements as spots over a red-green color spectrum.
SOM Clusters Displays the results of self-organizing map cluster analysis.
Tabular Microarray Panel Presents the numerical values of the expression measurements in a table format; each row represents an individual probe and the columns display the signal and background intensities and intensity ratios
Normalizer
| Plugin |
Description |
Compatibility
|
| Color Mosaic |
Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. |
Verified to work on 3.0
|
| Clustering |
Contains analysis components to perform hierarchical clustering self-organizing maps clustering on microarray expression data. |
Verified to work on 3.0
|
| caScript |
A scripting language engine for geWorkbench. |
Not yet verified.
|
Annoatation
| Plugin |
Description |
Compatibility
|
| Color Mosaic |
Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. |
Verified to work on 3.0
|
Network Generation
| Plugin |
Description |
Compatibility
|
| Color Mosaic |
Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. |
Verified to work on 3.0
|
Analysis
| Plugin |
Description |
Compatibility
|
| Color Mosaic |
Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. |
Verified to work on 3.0
|
