Plugins are sets of pluggable components for geWorkbench.
Below is the list of available plugins.
Microarray Visualization
| Plugin |
Description |
Compatibility
|
| Color Mosaic |
Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. |
Verified to work on 3.0
|
| caBIO Pathways |
Displays BioCarta pathway diagrams for selected genes. |
TBD
|
| Dendrogram |
A tree-structured diagrams reflecting the results of hierarchical clustering analysis. |
TBD
|
| Expression Profiles |
Displays the expression of genes across several arrays/ hybridizations. |
TBD
|
| Image Viewer |
Mechanism to display snapshot images taken in the application. |
TBD
|
| Marker Annotations |
Allows users to retrieve and display CGAP annotations for genes within a marker panel. |
TBD
|
| Microarray Panel |
The image displays color-coded levels of gene expression,using a color scale varying gradually from red (up-regulated) through black (no change) to green (down-regulated). |
TBD
|
| SOM Clusters |
Displays the results of self-organizing map cluster analysis. |
TBD
|
| Tabular Microarray Panel |
Presents the numerical values of the expression measurements in a table format; each row represents an individual probe and the columns display the signal and background intensities and intensity ratios. |
TBD
|
Normalizer
| Plugin |
Description |
Compatibility
|
| Color Mosaic |
Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. |
Verified to work on 3.0
|
| Clustering |
Contains analysis components to perform hierarchical clustering self-organizing maps clustering on microarray expression data. |
Verified to work on 3.0
|
| caScript |
A scripting language engine for geWorkbench. |
Not yet verified.
|
Annoatation
| Plugin |
Description |
Compatibility
|
| Color Mosaic |
Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. |
Verified to work on 3.0
|
Network Generation
| Plugin |
Description |
Compatibility
|
| Color Mosaic |
Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. |
Verified to work on 3.0
|
Analysis
| Plugin |
Description |
Compatibility
|
| Color Mosaic |
Displays heat maps for microarray expression data, organized by phenotypic or gene groupings. |
Verified to work on 3.0
|
