Test file collection

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The following is a list of test data with a short description on where to find the data and why it is here

Test files for accuracy determination

Files can be found at \\genome8\Public\baj2107\TestData\accuracy

file type file name description
Netboost EdgeList
MAS5/GCOS
RMA/TAB delimited
.CEL
PDB
GenePix
FASTA

Test files for performance evaluation

files can be found at \\genome8\Public\baj2107\TestData\performance

file type file name description
Netboost EdgeList
MAS5/GCOS
RMA/TAB delimited GSE1133-HS_133A.tab-del.txt GEO data GSE1133. ~158 arrays, ~22,000 markers
.CEL
PDB
GenePix
FASTA

Files with errors in the file format

files can be found at \\genome8\Public\baj2107\TestData\bad_format

file type file name description
Netboost EdgeList
MAS5/GCOS
RMA/TAB delimited
.CEL
PDB
GenePix
FASTA

extreme cases with high/low values

files can be found at \\genome8\Public\baj2107\TestData\boundary_cases

file type file name description
Netboost EdgeList
MAS5/GCOS
RMA/TAB delimited
.CEL
PDB
GenePix
FASTA