User:Daly

Revision as of 15:40, 3 February 2006 by Daly (talk | contribs)

Tutorials

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Getting Started

  • Starting the application
  • GUI elements
    • Panels
    • Navigation

Loading Data

  • Data formats

Working with Marker and Phenotype Panels

  • Creating panels
  • Visualizing

Visualize Gene Expression

Filter and Normalize Data

Clustering Gene Expression Data

Differential Expression

  • T Test
  • Multi Test
  • Volcano Plot

Regulatory Network

  • Reverse Engineering
  • Cytoscape

Integrated Annotation Information

Enrichment Analysis

  • Go Term
    • Go Miner

Sequence Analysis

  • Sequence Retrieval
  • Sequence Homology Analysis
    • Blast
    • Other

Pattern Discovery

  • Position histogram

Promoter Analysis