User:Daly

Revision as of 14:56, 7 February 2006 by Daly (talk | contribs) (Overview)

Overview

(who uses this , why/ what for? background )


Major areas of focus include:

Tutorials

The following { insert description)

Getting Started

  • Starting the application
  • GUI elements
    • Panels
    • Navigation

Loading Data

  • Data formats

Working with Marker and Phenotype Panels

  • Creating panels
  • Visualizing

Visualize Gene Expression

Filter and Normalize Data

Clustering Gene Expression Data

  • Hierarchical Clustering
  • Self Organizing Map (SOM)

Differential Expression

  • T Test
  • Multi Test
    • Volcano Plot
    • Color Mosaic

Regulatory Network

  • Reverse Engineering
  • Cytoscape

Integrated Annotation Information

Enrichment Analysis

  • Go Term
    • Go Miner

Sequence Analysis

  • Sequence Retrieval
  • Sequence Homology Analysis
    • Blast
    • Other

Pattern Discovery

  • Position Histogram

Promoter Analysis