Difference between revisions of "GSEA"
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| − | =Overview= | + | ==Overview== |
Coming soon! | Coming soon! | ||
| − | = | + | ==Prerequisites== |
| + | * The "GSEA Analysis" and "GSEA Browser" must be loaded in the [[Component_Configuration_Manager|Component Configuration Manager]]. | ||
| − | + | * An expression dataset must be loaded in the Workspace. | |
| + | |||
| + | * Two (and only two) array sets must be activated in the [[Array_sets|Arrays]] component. They do not need to be marked "Case" or "Control", this will have no effect. These sets define the two classes used to calculate a measure of differential expression and from that the rank order of genes. | ||
| + | |||
| + | ==Parameters== | ||
| + | ===Required Parameters=== | ||
| + | |||
| + | |||
| + | [[Image:GSEA_Required_Parameters.png]] | ||
| + | |||
| + | |||
| + | ===Basic Parameters=== | ||
| + | |||
| + | |||
| + | [[Image:GSEA_Basic_Parameters.png]] | ||
| + | |||
| + | |||
| + | ===Advanced Parameters=== | ||
| + | |||
| + | |||
| + | [[Image:GSEA_Advanced_Parameters.png]] | ||
Revision as of 14:53, 14 January 2014
Contents
Overview
Coming soon!
Prerequisites
- The "GSEA Analysis" and "GSEA Browser" must be loaded in the Component Configuration Manager.
- An expression dataset must be loaded in the Workspace.
- Two (and only two) array sets must be activated in the Arrays component. They do not need to be marked "Case" or "Control", this will have no effect. These sets define the two classes used to calculate a measure of differential expression and from that the rank order of genes.
Parameters
Required Parameters
Basic Parameters
Advanced Parameters
