Difference between revisions of "SkyBase"

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==Overview==
 
==Overview==
  
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SkyBase is a database that stores the homology models built by SkyLine analysis for all NESG PSI2 protein structures. Users can search the database with their sequence of interest to find homology models which meet user-defined alignment coverage and sequence identity constraints.  See also
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SkyBase is a database that stores the homology models built by SkyLine analysis for all NESG PSI2 protein structures. Users can search the database with their sequence of interest to find homology models which meet user-defined alignment coverage and sequence identity constraints.   
  
 
===SkyBase Tutorial===
 
===SkyBase Tutorial===
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===Database Search Page===
 
===Database Search Page===
 
http://skybase.c2b2.columbia.edu/nesg3/nesg.php
 
http://skybase.c2b2.columbia.edu/nesg3/nesg.php
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==References==
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High-throughput computational structure-based characterization of protein families: START domains and implications for structural genomics (2010) Lee H, Li Z, Silkov A, Fischer M, Petrey D, Honig B, Murray D.  J Struct Funct Genomics. 11(1):51-9.  [http://www.ncbi.nlm.nih.gov/pubmed/20383749 Link to paper]

Revision as of 17:47, 21 March 2011

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Overview

SkyBase is a database that stores the homology models built by SkyLine analysis for all NESG PSI2 protein structures. Users can search the database with their sequence of interest to find homology models which meet user-defined alignment coverage and sequence identity constraints.

SkyBase Tutorial

http://skybase.c2b2.columbia.edu/nesg3/help/help.html


Database Search Page

http://skybase.c2b2.columbia.edu/nesg3/nesg.php


References

High-throughput computational structure-based characterization of protein families: START domains and implications for structural genomics (2010) Lee H, Li Z, Silkov A, Fischer M, Petrey D, Honig B, Murray D. J Struct Funct Genomics. 11(1):51-9. Link to paper

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