Difference between revisions of "Tutorial Data"

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All data sets used in the tutorials are available from the [[Download#Tutorial_data | download area]] of our site.
 
All data sets used in the tutorials are available from the [[Download#Tutorial_data | download area]] of our site.
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The file tutorial_data.zip contains the following files:
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*cardiogenomics.med.harvard.edu/            Contains 10 individual MAS5/GCOS format data files.
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*webmatrix_quantile_log2_dev1_mv0.exp      A geWorkbench "exp" format matrix file containing filtered, normalized data.
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                                            This data originally derives from the file "webmatrix.exp".
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*NM_024426-Wilms.fasta                      A Genbank nucleotide seqeuence file.
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*NP_077744-Wilms.fasta                      A Genbank protein seqeuence file.
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*H1H5_HistoneDB_NHGRI.fasta                Contains H1 and H5 histone sequences from the NHGRI.
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*ClusterTree38_Sequences.fasta              Contains sequences derived from hierarchical clustering.
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*cluster_tree_12markers.csv                Contains a list of markers derived from hierarchical clustering.

Revision as of 16:51, 22 May 2006

Home | Quick Start | Basics | Menu Bar | Preferences | Component Configuration Manager | Workspace | Information Panel | Local Data Files | File Formats | caArray | Array Sets | Marker Sets | Microarray Dataset Viewers | Filtering | Normalization | Tutorial Data | geWorkbench-web Tutorials

Analysis Framework | ANOVA | ARACNe | BLAST | Cellular Networks KnowledgeBase | CeRNA/Hermes Query | Classification (KNN, WV) | Color Mosaic | Consensus Clustering | Cytoscape | Cupid | DeMAND | Expression Value Distribution | Fold-Change | Gene Ontology Term Analysis | Gene Ontology Viewer | GenomeSpace | genSpace | Grid Services | GSEA | Hierarchical Clustering | IDEA | Jmol | K-Means Clustering | LINCS Query | Marker Annotations | MarkUs | Master Regulator Analysis | (MRA-FET Method) | (MRA-MARINa Method) | MatrixREDUCE | MINDy | Pattern Discovery | PCA | Promoter Analysis | Pudge | SAM | Sequence Retriever | SkyBase | SkyLine | SOM | SVM | T-Test | Viper Analysis | Volcano Plot


All data sets used in the tutorials are available from the download area of our site.

The file tutorial_data.zip contains the following files:


  • cardiogenomics.med.harvard.edu/ Contains 10 individual MAS5/GCOS format data files.
  • webmatrix_quantile_log2_dev1_mv0.exp A geWorkbench "exp" format matrix file containing filtered, normalized data.
                                           This data originally derives from the file "webmatrix.exp".
  • NM_024426-Wilms.fasta A Genbank nucleotide seqeuence file.
  • NP_077744-Wilms.fasta A Genbank protein seqeuence file.
  • H1H5_HistoneDB_NHGRI.fasta Contains H1 and H5 histone sequences from the NHGRI.
  • ClusterTree38_Sequences.fasta Contains sequences derived from hierarchical clustering.
  • cluster_tree_12markers.csv Contains a list of markers derived from hierarchical clustering.