Difference between revisions of "Marker Sets"

 
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==Overview==
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The Markers/Arrays component, located at lower left in the geWorkbench graphical interface, allows the user to define and use subsets of arrays and markers for a number of purposes.
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This section discusses the use of subsets of markers.  Please see the chapter [[Data_Subsets_-_Arrays | Data Subsets - Arrays]] for a discussion of the use of Array sets.
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In geWorkbench, term marker, includes genes, probes/probesets, and individual sequences, depending on the type of data loaded.  Sets of markers can be returned as the results of various analysis routines.
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==Section under construction==
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[[Image:T_Markers_basic_withProj.png]]
 
[[Image:T_Markers_basic_withProj.png]]
  

Revision as of 10:48, 16 June 2010

Home | Quick Start | Basics | Menu Bar | Preferences | Component Configuration Manager | Workspace | Information Panel | Local Data Files | File Formats | caArray | Array Sets | Marker Sets | Microarray Dataset Viewers | Filtering | Normalization | Tutorial Data | geWorkbench-web Tutorials

Analysis Framework | ANOVA | ARACNe | BLAST | Cellular Networks KnowledgeBase | CeRNA/Hermes Query | Classification (KNN, WV) | Color Mosaic | Consensus Clustering | Cytoscape | Cupid | DeMAND | Expression Value Distribution | Fold-Change | Gene Ontology Term Analysis | Gene Ontology Viewer | GenomeSpace | genSpace | Grid Services | GSEA | Hierarchical Clustering | IDEA | Jmol | K-Means Clustering | LINCS Query | Marker Annotations | MarkUs | Master Regulator Analysis | (MRA-FET Method) | (MRA-MARINa Method) | MatrixREDUCE | MINDy | Pattern Discovery | PCA | Promoter Analysis | Pudge | SAM | Sequence Retriever | SkyBase | SkyLine | SOM | SVM | T-Test | Viper Analysis | Volcano Plot


Overview

The Markers/Arrays component, located at lower left in the geWorkbench graphical interface, allows the user to define and use subsets of arrays and markers for a number of purposes.

This section discusses the use of subsets of markers. Please see the chapter Data Subsets - Arrays for a discussion of the use of Array sets.

In geWorkbench, term marker, includes genes, probes/probesets, and individual sequences, depending on the type of data loaded. Sets of markers can be returned as the results of various analysis routines.


Section under construction

T Markers basic withProj.png

T Markers basic.png

T Arrays basic.png

T Arrays basic withProj.png

T Marker SelectionSet.png

T Marker SelectionSet.png

T Markers Set Label.png

T Markers RightClickMenu.png

T Markers RightClickMenu Marker.png

T Markers New Marker Set.png

T Marker Sets Avail.png