geWorkbench

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A new ARACNE tutorial is coming soon....

ARACNE in geWorkbench is used to determine interactions between a hub gene and a set of selected genes (or all genes in the set).

Quick Example

Load a microarray dataset, e.g. "webmatrix2_quantile_log2_dev1.2_mv0.exp" (2226 probes).
Set a hub gene (e.g 1973_s_at)
Click Analyze.

The resulting adjancency matrix will be displayed in the Cytoscape network visualization component.