Difference between revisions of "GSEA"

(Prerequisites)
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* An expression dataset must be loaded in the Workspace.
 
* An expression dataset must be loaded in the Workspace.
  
* Two (and only two) array sets must be activated in the [[Array_sets|Arrays]] component. They do not need to be marked "Case" or "Control", this will have no effect.  These sets define the two classes used to calculate a measure of differential expression and from that the rank order of genes.
+
* Two (and only two) array sets must be activated in the [[Array_Sets|Arrays]] component. They do not need to be marked "Case" or "Control", this will have no effect.  These sets define the two classes used to calculate a measure of differential expression and from that the rank order of genes.
  
 
==Parameters==
 
==Parameters==

Revision as of 14:53, 14 January 2014

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Overview

Coming soon!

Prerequisites

  • An expression dataset must be loaded in the Workspace.
  • Two (and only two) array sets must be activated in the Arrays component. They do not need to be marked "Case" or "Control", this will have no effect. These sets define the two classes used to calculate a measure of differential expression and from that the rank order of genes.

Parameters

Required Parameters

GSEA Required Parameters.png


Basic Parameters

GSEA Basic Parameters.png


Advanced Parameters

GSEA Advanced Parameters.png