Difference between revisions of "Gene Ontology Term Analysis"
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− | The [http://geneontology.org/ Gene Ontology] | + | The [http://geneontology.org/ Gene Ontology] project describes genes (gene products) using terms from three structured vocabularies: biological process, cellular component and molecular function. |
− | A number of analysis methods in geWorkbench | + | A number of analysis methods in geWorkbench a list of interesting genes, for example, those differentially expressed (t-test), or those which show similarities in expression (Hierarchical Clustering, SOM, ARACNe). The Gene Ontology Enrichment component, also referred to as the "GO Terms" component, allows the genes in such a list to be characterized using their assignments to various categories in the Gene Ontology. It asks, for this list of genes, are any GO categories present at a level higher than expected by chance? |
+ | Information about the several enrichment methods can be found at http://compbio.charite.de/index.php/ontologizer2.html. | ||
− | This tutorial is currently being developed and will be complete on November | + | |
+ | This tutorial is currently being developed and will be complete on November 11, 2009. |
Revision as of 13:54, 10 November 2009
Home | Quick Start | Basics | Menu Bar | Preferences | Component Configuration Manager | Workspace | Information Panel | Local Data Files | File Formats | caArray | Array Sets | Marker Sets | Microarray Dataset Viewers | Filtering | Normalization | Tutorial Data | geWorkbench-web Tutorials |
Analysis Framework | ANOVA | ARACNe | BLAST | Cellular Networks KnowledgeBase | CeRNA/Hermes Query | Classification (KNN, WV) | Color Mosaic | Consensus Clustering | Cytoscape | Cupid | DeMAND | Expression Value Distribution | Fold-Change | Gene Ontology Term Analysis | Gene Ontology Viewer | GenomeSpace | genSpace | Grid Services | GSEA | Hierarchical Clustering | IDEA | Jmol | K-Means Clustering | LINCS Query | Marker Annotations | MarkUs | Master Regulator Analysis | (MRA-FET Method) | (MRA-MARINa Method) | MatrixREDUCE | MINDy | Pattern Discovery | PCA | Promoter Analysis | Pudge | SAM | Sequence Retriever | SkyBase | SkyLine | SOM | SVM | T-Test | Viper Analysis | Volcano Plot |
Overview
The Gene Ontology project describes genes (gene products) using terms from three structured vocabularies: biological process, cellular component and molecular function.
A number of analysis methods in geWorkbench a list of interesting genes, for example, those differentially expressed (t-test), or those which show similarities in expression (Hierarchical Clustering, SOM, ARACNe). The Gene Ontology Enrichment component, also referred to as the "GO Terms" component, allows the genes in such a list to be characterized using their assignments to various categories in the Gene Ontology. It asks, for this list of genes, are any GO categories present at a level higher than expected by chance?
Information about the several enrichment methods can be found at http://compbio.charite.de/index.php/ontologizer2.html.
This tutorial is currently being developed and will be complete on November 11, 2009.