Difference between revisions of "Gene Ontology Viewer"
(→Table Browser) |
(→Table Browser) |
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[[Image:GeneOntology_Viewer_Table_browser.png]] | [[Image:GeneOntology_Viewer_Table_browser.png]] | ||
| − | GO Subontology (Namespaces) - radio buttons allow the user to view all three subontologies, or just one at a time. The choices are: | + | '''GO Subontology (Namespaces)''' - radio buttons allow the user to view all three subontologies, or just one at a time. The choices are: |
* All | * All | ||
* Molecular Function (M) | * Molecular Function (M) | ||
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| − | + | '''Table Columns''' | |
* GO:ID - The Gene Ontology Term ID | * GO:ID - The Gene Ontology Term ID | ||
Revision as of 16:13, 26 May 2011
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Contents
Overview
The Gene Ontology Analysis Viewer allows direct browsing of the Gene Ontology, and also the visualization of GO Term analysis results.
The viewer presents the GO both in tabular form (Table tab) as well as in a tree form (Tree tab).
In addition, three windows provide additional details:
- A list below the selection windows shows all genes annotated with a selected term.
- The "Single Term View" shows the complete tree, including multiple paths through the GO directed acyclic graph, for any selected term.
- The Term/Gene Details windows provides additional details on an term or gene selected in the GO browser or the gene list.
Standalone Viewer Details
Table Browser
GO Subontology (Namespaces) - radio buttons allow the user to view all three subontologies, or just one at a time. The choices are:
- All
- Molecular Function (M)
- Biological Process (B)
- Cellular Component (C)
- All
Table Columns
- GO:ID - The Gene Ontology Term ID
- Name: The name associated with the GO Term.
- Namespace - the Gene Ontology Namespace to which each GO term belongs, abbreviated as as shown above under Subontology
Tree Browser
Gene List
Term/Gene Details
