SAM

Revision as of 17:50, 22 October 2013 by Smith (talk | contribs) (SAM Results Viewer)

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SAM - Significance Analysis of Microarrays

Local Installation of R Server

The SAM analysis component can use a local installation of R on your desktop computer.

This has been tested with R version 2.15.0 and 3.0.2.

There are special considerations for installing R on Windows computers, please see R installation on Windows.

Setting the R location in geWorkbench is covered at Preferences: R Location.


SAM Parameters

SAM Analysis Parameters.png


SAM Results Viewer

The Full SAM Reults viewer is shown here.

SAM Viewer full.png


The results can be sorted, e.g. on the fold change value as shown below.

SAM Viewer Overexpressed.png