Difference between revisions of "Tutorial Data"
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| + | ==Tutorial data files== | ||
All data sets used in the tutorials are available from the [[Download#Tutorial_data | download area]] of our site. | All data sets used in the tutorials are available from the [[Download#Tutorial_data | download area]] of our site. | ||
| − | The file tutorial_data.zip contains the following files: | + | The file "tutorial_data.zip" contains the following files: |
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| − | * '''cardiogenomics.med.harvard.edu/''' -Contains 10 individual MAS5/GCOS format data files. | + | *'''cardiogenomics.med.harvard.edu/''' -Contains 10 individual MAS5/GCOS format data files. |
| − | * '''webmatrix_quantile_log2_dev1_mv0.exp''' -A geWorkbench "exp" format matrix file containing filtered, normalized data. This data originally derives from the file "webmatrix.exp". | + | *'''webmatrix_quantile_log2_dev1_mv0.exp''' -A geWorkbench "exp" format matrix file containing filtered, normalized data. This data originally derives from the file "webmatrix.exp". |
* '''NM_024426-Wilms.fasta''' -A Genbank nucleotide seqeuence file. | * '''NM_024426-Wilms.fasta''' -A Genbank nucleotide seqeuence file. | ||
* '''NP_077744-Wilms.fasta''' -A Genbank protein seqeuence file. | * '''NP_077744-Wilms.fasta''' -A Genbank protein seqeuence file. | ||
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* '''ClusterTree38_Sequences.fasta''' -Contains sequences derived from hierarchical clustering. | * '''ClusterTree38_Sequences.fasta''' -Contains sequences derived from hierarchical clustering. | ||
* '''cluster_tree_12markers.csv''' -Contains a list of markers derived from hierarchical clustering. | * '''cluster_tree_12markers.csv''' -Contains a list of markers derived from hierarchical clustering. | ||
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| + | ==About the cardiogenomics microarray dataset== | ||
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| + | These example MAS5 format data files were obtained from the following site at Harvard University: | ||
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| + | http://cardiogenomics.med.harvard.edu/project-detail?project_id=229 | ||
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| + | A number of MAS5 format data files are available there. | ||
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| + | The specific project is the "Belgium Dataset of Aortic Stenosis, Congestive Cardiomyopathy and Normal LV Function", and the data is downloadable from: | ||
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| + | http://cardiogenomics.med.harvard.edu/groups/proj1/pages/download_Hs-belgium.html | ||
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| + | An abstract describing the study that produced them is also available, at: | ||
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| + | http://cardiogenomics.med.harvard.edu/groups/proj2/pages/Hs-belgium_home.html | ||
Revision as of 14:55, 6 June 2006
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Tutorial data files
All data sets used in the tutorials are available from the download area of our site.
The file "tutorial_data.zip" contains the following files:
- cardiogenomics.med.harvard.edu/ -Contains 10 individual MAS5/GCOS format data files.
- webmatrix_quantile_log2_dev1_mv0.exp -A geWorkbench "exp" format matrix file containing filtered, normalized data. This data originally derives from the file "webmatrix.exp".
- NM_024426-Wilms.fasta -A Genbank nucleotide seqeuence file.
- NP_077744-Wilms.fasta -A Genbank protein seqeuence file.
- H1H5_HistoneDB_NHGRI.fasta -Contains H1 and H5 histone sequences from the NHGRI.
- ClusterTree38_Sequences.fasta -Contains sequences derived from hierarchical clustering.
- cluster_tree_12markers.csv -Contains a list of markers derived from hierarchical clustering.
About the cardiogenomics microarray dataset
These example MAS5 format data files were obtained from the following site at Harvard University:
http://cardiogenomics.med.harvard.edu/project-detail?project_id=229
A number of MAS5 format data files are available there.
The specific project is the "Belgium Dataset of Aortic Stenosis, Congestive Cardiomyopathy and Normal LV Function", and the data is downloadable from:
http://cardiogenomics.med.harvard.edu/groups/proj1/pages/download_Hs-belgium.html
An abstract describing the study that produced them is also available, at:
http://cardiogenomics.med.harvard.edu/groups/proj2/pages/Hs-belgium_home.html
