Difference between revisions of "Workspace"

(Project Menu Options)
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[[Image:Project_Folders_Project_Options.png]]
 
[[Image:Project_Folders_Project_Options.png]]
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===Open Files===
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* Loading data from local files is covered in the chapter [[Local_Data_Files | Local Data Files]]
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* Retrieving data from remote sources (caArray) is covered in [[Remote_Data_Sources | Remote Data Sources]]
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===Open PDB File from RCSB Protein Data Bank===
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If '''Open PDB File from RCSB Protein Data Bank''' is chosen, a dialog box appears.
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[[Image:Project_Folders_Project_Open_RCSB_PDB.png]]
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Type in the name of a PDB structure entry and it will be retrieved from the RCSB Protein Data Bank and loaded into geWorkbench.
  
  
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'''2.''' Select '''Remove'''.
 
'''2.''' Select '''Remove'''.
 
  
 
==Project Data Node Menu Options==
 
==Project Data Node Menu Options==

Revision as of 19:07, 11 March 2011

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Outline

In this tutorial, you will learn how to:

  • Create a new Project.
  • Rename a project and/or project node.
  • Remove a project and/or project node.
  • Save project files that you have created.


Workspaces and Projects

In the Project Folders component there is a top-level object called a workspace. The workspace can contain one or more separate projects, and each project can contain opened data files and analysis results. An analogy might be that a workspace is like a drawer in a filing cabinet, and projects are individual folders in that drawer. Projects allow data to be grouped, for example by experiment. A project can contain many different types of data, for example microarray data, FASTA sequence files and graphical images. The workspace as a whole, with all its projects and data nodes, can be saved and restored. However, only one workspace can be open at one time.

All data must belong to a project.


Creating a new project

There are two ways to create a new project. First, select the Workspace node in the Project Folders component. Then, either

(1) In the top-level Menu, select File->New->Project.

File New Project.png

or,

(2) In the Project Folders component, right-click on the Workspace and select "New Project".


Project Folders Workspace New Project.png


Either way, the new Project is placed into the workspace:


Project Folders Project.png


Project Menu Options

Right-clicking on a Project node gives a menu with the following options

  • Open File(s)
  • Open PDB File from RCSB Protein Data Bank
  • Rename Project
  • Remove Project


Project Folders Project Options.png


Open Files


Open PDB File from RCSB Protein Data Bank

If Open PDB File from RCSB Protein Data Bank is chosen, a dialog box appears.


Project Folders Project Open RCSB PDB.png


Type in the name of a PDB structure entry and it will be retrieved from the RCSB Protein Data Bank and loaded into geWorkbench.


Renaming a project

1. Right-click on Project folder.

2. Select Rename.


T ProjectFolder RenameProject.png


3. In the pop-up screen rename your project.

4. Click on the OK button


Removing a project

1. Right-click on Project folder.

2. Select Remove.

Project Data Node Menu Options

Renaming a data node

1. Right-click on a Project Folder data node.

2. Select Rename.

T RenameNode.png


3. In the pop-up screen rename your data node.

T ProjectFolder RenameDataset2.png


4. Click on the OK button.



Removing a project data node

1. Right-click on the data node.

2. Select Remove.


Saving a data node to a file

It is here that, among other things, you can create the matrix multi-experiment file format used by geWorkbench from a merged dataset.

1. Right-click on data node that you want to save.

2. Click Save.

T NodeOptionsMenu.png


A standard file Save screen will come up.

3. Choose a location.

4. Enter a name.

5. Click on the Save button.