Tutorial - Getting Started

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Home | Getting Started | Basics | Component Configuration | Tutorial Data | Data Subsets | Projects and Data Files | Project Details | Local Data Files | Remote Data Sources (caArray) | Viewing a Microarray Dataset | Filtering and Normalizing

Analysis Framework | ANOVA | ARACNe | BLAST | Cellular Networks KnowledgeBase | Classification | Color Mosaic | Cytoscape | Differential Expression (t-test) | Expression Value Distribution | Gene Ontology Term Over-representation | Grid Services | Hierarchical Clustering | Jmol | Marker Annotations | Mark-Us | Master Regulator Analysis | MatrixREDUCE | MINDy | Pattern Discovery | Promoter Analysis | Pudge | Sequence Retrieval | SOM


Contents

Versions available:

Downloads are available for current versions of Windows, Linux and Macintosh OS-X. Our primary development and testing platform is Windows XP.


Requirements:

Java:

geWorkbench requires that a version of the Sun Java Runtime Environment 5.0 or higher be installed on your computer. (This is also known as JRE version 1.5). The JRE is available at J2SE 5.0. However, the Windows and Linux versions of geWorkbench include the JRE in their download package, and the Macintosh supplies its own copy of the JRE.

Memory:

Testing of geWorkbench is done on machines with at least 1 GB of memory. Working with large datasets (100s of arrays) may require additional memory.

Installation:

See the Download menu at left to obtain geWorkbench. The self-installing file includes all currently available geWorkbench modules as well as several example data files. The download package is created using InstallAnywhere from ZeroG Software.

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